General teaching resources
- Bioinformatics lecture notes. Lecture notes for a graduate class on string algorithms.
- Primer on genome assembly. A quick start to learn what genome assembly is all about.
- Coverage and abundance estimation. A highlight of terminology and issues related to the use of depth of coverage to estimate the abundance of DNA sequences.
Professional education
- 2018-2023. Strategies and techniques for analyzing microbial population structures (STAMPS) – co-director
- 2019 course materials – https://github.com/mblstamps/stamps2019/wiki
- 2018 course materials – https://github.com/mblstamps/stamps2018/wiki
- 2014-2017. Strategies and techniques for analyzing microbial population structures (STAMPS) – faculty
Classroom education
2020 | |
Spring | Fall |
no teaching | CMSC423: Bioinformatic Algorithms Databases and Tools Experience teaching this course in an asynchronous setting is (sparsely) blogged here: https://redesigning423.wordpress.com/blog/ |
2019 | |
Spring | Fall |
CMSC701:Computational Genomics | CMSC423: Bioinformatic Algorithms Databases and Tools |
2018 | |
Spring | Fall |
no teaching | CMSC423: Bioinformatic Algorithms Databases and Tools |
2017 | |
Spring | Fall |
no teaching | CMSC423: BioinformaticAlgorithms Databases and Tools |
2016 | |
Spring | Fall |
CMSC131: Object-oriented Programming I | CMSC423: BioinformaticAlgorithms Databases and Tools |
2015 | |
Spring | Fall |
CMSC423: BioinformaticAlgorithms Databases and Tools | CMSC701: Computational Genomics |
2014 | |
Spring | Fall |
CMSC424: Database Design | CMSC701: Computational Genomics CMSC828Q: Lectures in Bioinformatics |
2013 | |
Spring | Fall |
sabbatical leave | CMSC701 – Computational Genomics |
2012 | |
Spring | Fall |
no teaching | sabbatical leave |
2011 | |
Spring | Fall |
CMSC424: Database Design | CMSC131H: Object-oriented Programming I |
2010 | |
Spring | Fall |
CMSC858W – Algorithms for biosequence analysis | no teaching |
2009 | |
Spring | Fall |
no teaching | CMSC423: BioinformaticAlgorithms Databases and Tools |
2008 | |
Spring | Fall |
CMSC424 – Database Design CMSC858P – Algorithms for Biosequence Analysis | CMSC423: BioinformaticAlgorithms Databases and Tools |
2007 | |
Spring | Fall |
CMSC423: Bioinformatic Algorithms Databases and Tools | no teaching |
2006 | |
Spring | Fall |
no teaching | CMSC858E – Algorithms for Biosequence Analysis |